スレッディング (タンパク質)
出典: フリー百科事典『ウィキペディア（Wikipedia）』 (2024/04/07 21:12 UTC 版)
参照項目
- ホモロジーモデリング
- タンパク質構造予測
- タンパク質構造予測ソフトウェアの一覧
推薦文献
- Finkelstein, AV; Reva, BA (Jun 1991). “A search for the most stable folds of protein chains”. Nature 351 (6326): 497–9. Bibcode: 1991Natur.351..497F. doi:10.1038/351497a0. PMID 2046752.
- Lathrop RH (1994). “The protein threading problem with sequence amino acid interaction preferences is NP-complete”. Protein Eng 7 (9): 1059–1068. doi:10.1093/protein/7.9.1059. PMID 7831276.
- Jones DT, Hadley C (2000). “Threading methods for protein structure prediction”. Bioinformatics: Sequence, structure and databanks. Heidelberg: Springer-Verlag. pp. 1–13
- Xu J, Li M, Kim D, Xu Y (2003). “RAPTOR: Optimal Protein Threading by Linear Programming, the inaugural issue”. J Bioinform Comput Biol 1 (1): 95–117. doi:10.1142/S0219720003000186. PMID 15290783.
- Xu J, Li M, Lin G, Kim D, Xu Y (2003). “Protein threading by linear programming”. Pac Symp Biocomput: 264–275. PMID 12603034.
- ^ Bowie JU, Lüthy R, Eisenberg D (1991). “A method to identify protein sequences that fold into a known three-dimensional structure”. Science 253 (5016): 164–170. Bibcode: 1991Sci...253..164B. doi:10.1126/science.1853201. PMID 1853201.
- ^ Jones DT, Taylor WR, Thornton JM (1992). “A new approach to protein fold recognition”. Nature 358 (6381): 86–89. Bibcode: 1992Natur.358...86J. doi:10.1038/358086a0. PMID 1614539.
- ^ Peng, Jian; Jinbo Xu (2011). “RaptorX: exploiting structure information for protein alignment by statistical inference”. Proteins 79 Suppl 10: 161–171. doi:10.1002/prot.23175. PMC 3226909. PMID 21987485.
- ^ Peng, Jian; Jinbo Xu (2010). “Low-homology protein threading”. Bioinformatics 26 (12): i294–i300. doi:10.1093/bioinformatics/btq192. PMC 2881377. PMID 20529920.
- ^ Peng, Jian; Jinbo Xu (April 2011). “A multiple-template approach to protein threading”. Proteins 79 (6): 1930–1939. doi:10.1002/prot.23016. PMC 3092796. PMID 21465564.
- ^ Ma, Jianzhu; Sheng Wang; Jinbo Xu (June 2012). “A conditional neural fields model for protein threading”. Bioinformatics 28 (12): i59–66. doi:10.1093/bioinformatics/bts213. PMC 3371845. PMID 22689779.
- ^ Wu S, Zhang Y (2008). “MUSTER: Improving protein sequence profile–profile alignments by using multiple sources of structure information”. Proteins 72 (2): 547–56. doi:10.1002/prot.21945. PMC 2666101. PMID 18247410.
- ^ Yang Y, Faraggi E, Zhao H, Zhou Y (2011). “Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates”. Bioinformatics 27 (15): 2076–2082. doi:10.1093/bioinformatics/btr350. PMC 3137224. PMID 21666270.
- ^ Gront D, Blaszczyk M, Wojciechowski P, Kolinski A (2012). “BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles”. Nucleic Acids Research 40 (W1): W257–W262. doi:10.1093/nar/gks555. PMC 3394251. PMID 22693216.
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