タウム古細菌
(タウムアーキオータ から転送)
出典: フリー百科事典『ウィキペディア（Wikipedia）』 (2024/06/12 01:14 UTC 版)
タウム古細菌（タウムアーキオータ、タウマルカエオタ、Thaumarchaeota、Thaumarchaea）は、2008年に提案された古細菌の門である[1]。古細菌ではあるが極限環境微生物としての性格は薄く、16S rRNAクローンによる分布は海洋、土壌が中心である。
- ^ a b Brochier-Armanet, C., Boussau, B., Gribaldo, S., Forterre, P. (March 2008). “Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota”. Nat. Rev. Microbiol. 6 (3): 245–52. doi:10.1038/nrmicro1852. PMID 18274537.
- ^ Kelly S, Wickstead B, Gull K. (2011). “Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes.”. Proc Biol Sci. 278 (1708): 1009-18. doi:10.1098/rspb.2010.1427.
- ^ Lionel Guy, Thijs J.G. Ettema (2011). “The archaeal ‘TACK’ superphylum and the origin of eukaryotes”. Trends in Microbiology 19 (12): 580-587. doi:10.1016/j.tim.2011.09.002.
- ^ Yutin, N. & Koonin, E. V. 2012 Archaeal origin of tubulin. Biol. Direct. 7, 10. (doi:10.1186/1745-6150-7-10)
- ^ Lionel Guy, Thijs J.G. Ettema (2011). “The archaeal ‘TACK’ superphylum and the origin of eukaryotes”. Trends in Microbiology 19 (12): 580-587.
- ^ Preston CM, Wu KY, Molinski TF, De Long EF (1996). “A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov”. Proc. Natl. Acad. Sci. USA 93: 6241–6246. doi:10.1073/pnas.93.13.6241. PMID 8692799.
- ^ Konneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB, Stahl DA (2005). “Isolation of an autotrophic ammonia-oxidizing marine archaeon”. Nature 437: 543–546. PMID 16177789.
- ^ a b Hallam SJ, Konstantinidis KT, Putnam N, Schleper C, Watanabe Y, Sugahara J, Preston C, de la Torre J, Richardson PM, DeLong EF (2006). “Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum”. Proc. Natl. Acad. Sci. U.S.A. 103 (48): 18296–18301. doi:10.1073/pnas.0608549103. PMID 17114289.
- ^ Walker, C.B. et al. (2010). “Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea”. Proc. Natl. Acad. Sci. U.S.A. 107 (19): 8818-23. doi:10.1073/pnas.0913533107. PMID 20421470.
- ^ a b c Stieglmeier, M., et al. (2014). “Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota”. Int. J. Syst. Evol. Microbiol. 64: 2738-52. doi:10.1099/ijs.0.063172-0. PMID 24907263.
- ^ a b c d e f g h i Qin, W., et al. (2017). “Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota”. Int. J. Syst. Evol. Microbiol. 67 (12): 5067-5079. doi:10.1099/ijsem.0.002416. PMID 29034851.
- ^ Karner, M. B., DeLong, E. F., Karl, D. M. (2001). “Archaeal dominance in the mesopelagic zone of the Pacific Ocean”. Nature 409 (6819): 507–10. doi:10.1038/35054051. PMID 11206545.
- ^ a b Jung, M.Y., et al. (2018). “Nitrosarchaeum koreense gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon member of the phylum Thaumarchaeota isolated from agricultural soil”. Int. J. Syst. Evol. Microbiol.: 5067-5079. doi:10.1099/ijsem.0.002926. PMID 30124400.
- ^ de la Torre, J.R., et al. (2008). “Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol”. Environ. Microbiol. 10 (3): 810-8. doi:10.1111/j.1462-2920.2007.01506.x. PMID 18205821.
- ^ Daebeler, A., et al. (2018). “Cultivation and Genomic Analysis of "Candidatus Nitrosocaldus islandicus," an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland”. Front. Microbiol. 9 (193). doi:10.3389/fmicb.2018.00193. PMID 29434576.
- ^ Abby, S. S., et al. (2018). “Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome”. Front. Microbiol. 9 (28). doi:10.3389/fmicb.2018.00028. PMID 18205821.
- ^ Leininger, S., Urich, T., Schloter, M., Schwark, L., Qi, J., Nicol, G. W., Prosser, J. I., Schuster, S. C., Schleper, C. (2006). “Archaea predominate among ammonia-oxidizing prokaryotes in soils”. Nature 442 (7104): 806–9. doi:10.1038/nature04983. PMID 16915287.
- ^ Wuchter, C., Abbas, B., Coolen, M. J., Herfort, L., van Bleijswijk, J., Timmers, P., Strous, M., Teira, E., Herndl, G. J., Middelburg, J. J., Schouten, S., Sinninghe Damsté, J. S. (2006). “Archaeal nitrification in the ocean”. Proc Natl Acad Sci U S A 103 (33): 12317–22. doi:10.1073/pnas.0600756103. PMID 16894176.
- ^ Doxey, A. C., et al. (2015). “Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production”. ISME J. 9 (2): 461-71. doi:10.1038/ismej.2014.142. PMID 25126756.
- ^ F Muller, T Brissac, N Le Bris, H Felbeck, O Gros (2010). “First description of giant Archaea (Thaumarchaeota) associated with putative bacterial ectosymbionts in a sulfidic marine habitat”. Environmental Microbiology 12 (8): 2371–2383. doi:10.1111/j.1462-2920.2010.02309.x.
- ^ Kato, S., et al. (2019). “Isolation and characterization of a thermophilic sulfur- and iron-reducing thaumarchaeote from a terrestrial acidic hot spring”. ISME J.. doi:10.1038/s41396-019-0447-3. PMID 31171857.
- ^ Shingo, Kato, et al. (2021). “Conexivisphaera calida gen. nov., sp. nov., a thermophilic sulfur- and iron-reducing archaeon, and proposal of Conexivisphaeraceae fam. nov., Conexivisphaerales ord. nov., and Conexivisphaeria class. nov. in the phylum Thaumarchaeota”. Int J Syst Evol Microbiol . 7 (1). doi:10.1099/ijsem.0.004595.
- ^ Nunoura T, Takaki Y, Kakuta J, Nishi S, Sugahara J, Kazama H, Chee GJ, Hattori M, Kanai A, Atomi H, Takai K, Takami H. (2010). “Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.”. Nucleic Acids Res. 39 (8): 3204-23. PMID 21169198.
- ^ a b Lindås, A.C., Karlsson, E.A., Lindgren, M.T., Ettema, T.J., Bernander, R. (2008). “A unique cell division machinery in the Archaea”. Proc Natl Acad Sci U S A 105 (45): 18942-6. doi:10.1073/pnas.0809467105. PMID 18987308.Cann, I.K. (2008). “Cell sorting protein homologs reveal an unusual diversity in archaeal cell division”. Proc Natl Acad Sci U S A 105 (45): 18653-4. doi:10.1073/pnas.0810505106. PMID 19033202.
- ^ Cubonova, L., Sandman, K., Hallam, S. J., Delong, E. F., Reeve, J. N. (2005). “Histones in crenarchaea”. Journal of Bacteriology 187 (15): 5482–5485. doi:10.1128/JB.187.15.5482-5485.2005. PMID 16030242.
- ^ Brochier-Armanet, C., Gribaldo, S., Forterre, P. (2008). “A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya”. Biol. Direct 3: 54. doi:10.1186/1745-6150-3-54. PMID 19105819.
- ^ Stieglmeier, M., et al. (2014). “Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota”. Int. J. Syst. Evol. Microbiol. 64: 2738-52. doi:10.1099/ijs.0.063172-0. PMID 24907263.
- ^ Qin, W., et al. (2017). “Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota”. Int. J. Syst. Evol. Microbiol. 67 (12): 5067-5079. doi:10.1099/ijsem.0.002416. PMID 29034851.
- ^ Jung, M.Y., et al. (2018). “Nitrosarchaeum koreense gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon member of the phylum Thaumarchaeota isolated from agricultural soil”. Int. J. Syst. Evol. Microbiol.: 3084-3095. doi:10.1099/ijsem.0.002926. PMID 30124400.
- ^ Shingo, Kato, et al. (2021). “Conexivisphaera calida gen. nov., sp. nov., a thermophilic sulfur- and iron-reducing archaeon, and proposal of Conexivisphaeraceae fam. nov., Conexivisphaerales ord. nov., and Conexivisphaeria class. nov. in the phylum Thaumarchaeota”. Int J Syst Evol Microbiol. 7 (1). doi:10.1099/ijsem.0.004595.
[続きの解説]
「タウム古細菌」の続きの解説一覧
- 1 タウム古細菌とは
- 2 タウム古細菌の概要
- 3 他の古細菌との違い
- 4 関連項目
- タウム古細菌のページへのリンク
