Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote

Schoenknecht G, Chen W-H, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, et al. (2013)
Science 339(6124): 1207-1210.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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urn:nbn:de:0070-pub-29151468
Autor*in
Schoenknecht, Gerald; Chen, Wei-Hua; Ternes, Chad M.; Barbier, Guillaume G.; Shrestha, Roshan P.; Stanke, Mario; Bräutigam, AndreaUniBi ; Baker, Brett J.; Banfield, Jillian F.; Garavito, R. Michael; Carr, Kevin; Wilkerson, Curtis
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Einrichtung
Fakultät für Biologie > Computational Biology
Abstract / Bemerkung
Some microbial eukaryotes, such as the extremophilic red alga Galdieria sulphuraria, live in hot, toxic metal-rich, acidic environments. To elucidate the underlying molecular mechanisms of adaptation, we sequenced the 13.7-megabase genome of G. sulphuraria. This alga shows an enormous metabolic flexibility, growing either photoautotrophically or heterotrophically on more than 50 carbon sources. Environmental adaptation seems to have been facilitated by horizontal gene transfer from various bacteria and archaea, often followed by gene family expansion. At least 5% of protein-coding genes of G. sulphuraria were probably acquired horizontally. These proteins are involved in ecologically important processes ranging from heavy-metal detoxification to glycerol uptake and metabolism. Thus, our findings show that a pan-domain gene pool has facilitated environmental adaptation in this unicellular eukaryote.
Erscheinungsjahr
2013
Zeitschriftentitel
Science
Band
339
Ausgabe
6124
Seite(n)
1207-1210
ISSN
0036-8075
Page URI
https://pub.uni-bielefeld.de/record/2915146

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Schoenknecht G, Chen W-H, Ternes CM, et al. Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote. Science. 2013;339(6124):1207-1210.
Schoenknecht, G., Chen, W. - H., Ternes, C. M., Barbier, G. G., Shrestha, R. P., Stanke, M., Bräutigam, A., et al. (2013). Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote. Science, 339(6124), 1207-1210. doi:10.1126/science.1231707
Schoenknecht, Gerald, Chen, Wei-Hua, Ternes, Chad M., Barbier, Guillaume G., Shrestha, Roshan P., Stanke, Mario, Bräutigam, Andrea, et al. 2013. “Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote”. Science 339 (6124): 1207-1210.
Schoenknecht, G., Chen, W. - H., Ternes, C. M., Barbier, G. G., Shrestha, R. P., Stanke, M., Bräutigam, A., Baker, B. J., Banfield, J. F., Garavito, R. M., et al. (2013). Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote. Science 339, 1207-1210.
Schoenknecht, G., et al., 2013. Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote. Science, 339(6124), p 1207-1210.
G. Schoenknecht, et al., “Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote”, Science, vol. 339, 2013, pp. 1207-1210.
Schoenknecht, G., Chen, W.-H., Ternes, C.M., Barbier, G.G., Shrestha, R.P., Stanke, M., Bräutigam, A., Baker, B.J., Banfield, J.F., Garavito, R.M., Carr, K., Wilkerson, C., Rensing, S.A., Gagneul, D., Dickenson, N.E., Oesterhelt, C., Lercher, M.J., Weber, A.P.M.: Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote. Science. 339, 1207-1210 (2013).
Schoenknecht, Gerald, Chen, Wei-Hua, Ternes, Chad M., Barbier, Guillaume G., Shrestha, Roshan P., Stanke, Mario, Bräutigam, Andrea, Baker, Brett J., Banfield, Jillian F., Garavito, R. Michael, Carr, Kevin, Wilkerson, Curtis, Rensing, Stefan A., Gagneul, David, Dickenson, Nicholas E., Oesterhelt, Christine, Lercher, Martin J., and Weber, Andreas P. M. “Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote”. Science 339.6124 (2013): 1207-1210.
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Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A., Nucleic Acids Res. 38(Database issue), 2009
PMID: 19920124
TCDB: the Transporter Classification Database for membrane transport protein analyses and information.
Saier MH Jr, Tran CV, Barabote RD., Nucleic Acids Res. 34(Database issue), 2006
PMID: 16381841
CDD: a conserved domain database for interactive domain family analysis.
Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH., Nucleic Acids Res. 35(Database issue), 2006
PMID: 17135202
A reassessment of the function of the so-called compatible solutes in the halophytic plumbaginaceae Limonium latifolium.
Gagneul D, Ainouche A, Duhaze C, Lugan R, Larher FR, Bouchereau A., Plant Physiol. 144(3), 2007
PMID: 17468212
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