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Flavobacterium ajazii sp. nov., Isolated from Seaweed of Gouqi Island, China

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Abstract

A novel bacterium designated SSM4.2T was isolated from seaweed of Gouqi Island, which is the center of the Zhoushan fishing ground in the East China Sea. Strain SSM4.2T was Gram-stain-negative, bright yellow-pigmented, short rod-shaped, non-flagellated, non-spore forming, aerobic and motile by gliding. Growth was observed at 4–37 °C (optimum 25–30 °C), pH 6.0–8.0 (optimum pH 7.0) and 0–2.0% (w/v) NaCl (optimum 0%) concentration. The strain was catalase- and oxidase-positive. Menaquinone-6 (MK-6) was found as the sole respiratory quinone and zeaxanthin as the main carotenoid pigment. The predominant fatty acids (≥ 10%) were iso-C15:0, iso-C15:1 G, iso-C17:0 3-OH and summed feature 3 (C16:1 ω7c /C16:1 ω6c). The major polar lipid was phosphatidylethanolamine (PE). The genome size was 5.7 Mbp. The DNA G + C content was 34.1 mol%. 16S rRNA gene sequence revealed that strain SSM4.2T belongs to the genus Flavobacterium and shares high-sequence similarity with F. limi KACC 18851T (98.1%), F. hydrophilum KACC 19591T (97.6%), F. defluvii KCTC 12612T (97.1%), F. cheongpyeongense KACC 19592T (97.0%) and F. fluviatile KCTC 52446T (96.9%). Strain SSM4.2T had 73.2–84.6% average nucleotide identity and 19.1–29.4% digital DNA-DNA hybridization values with its closest type strains. Based on its phenotypic, chemotaxonomic, phylogenetic and genomic features, strain SSM4.2T represents a novel species of the genus Flavobacterium, for which the name Flavobacterium ajazii sp. nov. is proposed. The type strain is SSM4.2T (= KCTC 72807T = MCCC 1K04370T).

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References

  1. Bergey DH, Harrison FC, Breed RS, Hammer BW, Huntoon FM (1923) Genus II. Flavobacterium gen. nov. In: Whitman W (ed) Bergey’s manual of determinative bacteriology. Williams & Wilkins, Baltimore, pp 97–117

    Google Scholar 

  2. Feng XM, Tan X, Jia L, Long PP, Han L, Lv J (2015) Flavobacterium buctense sp. nov., isolated from freshwater. Arch Microbiol 197:1109–1115

    Article  CAS  Google Scholar 

  3. Song L, Liu H, Huang Y, Dai X, Zhou Y (2013) Flavobacterium marinum sp. nov., isolated from seawater. Int J Syst Evol Microbiol 63:3551–3555

    Article  CAS  Google Scholar 

  4. Dahal RH, Chaudhary DK, Kim J (2017) Flavobacterium flaviflagrans sp. nov., a bacterium of the family Flavobacteriaceae isolated from forest soil. Int J Syst Evol Microbiol 67:2653–2659

    Article  CAS  Google Scholar 

  5. Dahal RH, Kim J (2018) Flavobacterium ureilyticum sp. nov., a novel urea hydrolysing bacterium isolated from stream bank soil. Antonie Van Leeuwenhoek 111:2131–2139

    Article  CAS  Google Scholar 

  6. Xiao YP, Hui W, Lee JS, Lee KC, Quan ZX (2011) Flavobacterium dongtanense sp. nov., isolated from the rhizosphere of a wetland reed. Int J Syst Evol Microbiol 61:343–346

    Article  CAS  Google Scholar 

  7. Ryu SH, Park M, Jeon Y, Lee JR, Park W, Jeon CO (2007) Flavobacterium filum sp. nov., isolated from a wastewater treatment plant in Korea. Int J Syst Evol Microbiol 57:2026–2030

    Article  CAS  Google Scholar 

  8. Chaudhary DK, Kim DU, Kim D, Kim J (2019) Flavobacterium petrolei sp. nov., a novel psychrophilic, diesel-degrading bacterium isolated from oil-contaminated Arctic soil. Sci Rep 9:4134

    Article  Google Scholar 

  9. Zhang GQ, Liu Q, Liu HC, Zhou YG, Xin YH (2019) Flavobacterium ranwuense sp. nov., isolated from glacier. Int J Syst Evol Microbiol 69:3812–3817

    Article  CAS  Google Scholar 

  10. Zhang SY, Wang L, Wang WD (2008) Algal communities at Gouqi Island in the Zhoushan archipelago, China. J Appl Phycol 20:853–861

    Article  Google Scholar 

  11. Debnath SC, Chen C, Liu SX, Di YN, Zheng DQ, Li XY, Xu XW, Xu JZ, Wang PM (2019) Flavobacterium sharifuzzamanii sp. nov., isolated from the sediments of the East China Sea. Curr Microbiol 76:297–303

    Article  CAS  Google Scholar 

  12. Bernardet JF, Nakagawa Y, Holmes B (2002) Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52:1049–1070

    CAS  PubMed  Google Scholar 

  13. Fautz E, Reichenbach H (1980) A simple test for flexirubin-type pigments. FEMS Microbiol Lett 8:87–91

    Article  CAS  Google Scholar 

  14. Asker D, Beppu T, Ueda K (2007) Sphingomonas astaxanthinifaciens sp. nov., a novel astaxanthin-producing bacterium of the family Sphingomonadaceae isolated from Misasa, Tottori, Japan. FEMS Microbiol Lett 273:140–148

    Article  CAS  Google Scholar 

  15. Sun C, Huo YY, Liu JJ, Pan J, Qi YZ, Zhang XQ, Zhang Y, Zheng G, Wu M (2014) Thalassomonas eurytherma sp. nov., a marine proteobacterium. Int J Syst Evol Microbiol 64:2079–2083

    Article  CAS  Google Scholar 

  16. Wu XY, Zheng G, Zhang WW, Xu XW, Wu M, Zhu XF (2010) Amphibacillus jilinensis sp. nov., a facultatively anaerobic, alkaliphilic bacillus from a soda lake. Int J Syst Evol Microbiol 60:2540–2543

    Article  CAS  Google Scholar 

  17. Frank JA, Reich CI, Sharma S, Weisbaum JS, Wilson BA, Olsen GJ (2008) Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl Environ Microbiol 74:2461–2470

    Article  CAS  Google Scholar 

  18. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410

    Article  CAS  Google Scholar 

  19. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y, Seo H, Chun J (2017) Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 67:1613–1617

    Article  CAS  Google Scholar 

  20. Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874

    Article  CAS  Google Scholar 

  21. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    CAS  PubMed  Google Scholar 

  22. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376

    Article  CAS  Google Scholar 

  23. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Biol 20:406–416

    Article  Google Scholar 

  24. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide-sequences. J Mol Evol 16:111–120

    Article  CAS  Google Scholar 

  25. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455–477

    Article  CAS  Google Scholar 

  26. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O (2008) The RAST server: rapid annotations using subsystems technology. BMC Genom 9:1–15

    Article  Google Scholar 

  27. Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomason JA III, Stevens R, Vonstein V, Wattam AR, Xia F (2015) RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep 5:8365–8365

    Article  Google Scholar 

  28. Blin K, Shaw S, Steinke K, Villebro R, Ziemert N, Lee SY, Medema MH, Weber T (2019) antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline. Nucleic Acids Res 47:W81–W87

    Article  CAS  Google Scholar 

  29. Yoon SH, Ha SM, Lim J, Kwon S, Chun J (2017) A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek 110:1281–1286

    Article  CAS  Google Scholar 

  30. Meier-Kolthoff JP, Auch AF, Klenk HP, Goker M (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinform 14:60

    Article  Google Scholar 

  31. Tindall BJ (1990) Lipid composition of Halobacterium Lacusprofundi. FEMS Microbiol Lett 66:199–202

    Article  CAS  Google Scholar 

  32. Komagata K, Suzuki KI (1987) Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–207

    Article  CAS  Google Scholar 

  33. Choi JY, Kim JH, Lee PC (2018) Flavobacterium kingsejongi sp. nov., a carotenoid-producing species isolated from Antarctic penguin faeces. Int J Syst Evol Microbiol 68:911–916

    Article  CAS  Google Scholar 

  34. Mann AJ, Hahnke RL, Huang S, Werner J, Xing P, Barbeyron T, Huettel B, Stüber K, Reinhardt R, Harder J, Glöckner FO, Amann RI, Teeling H (3901T) The genome of the alga-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for degradation of algal polysaccharides. Appl Environ Microbiol 79:6813–6822

    Article  CAS  Google Scholar 

  35. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM (2007) DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 57:81–91

    Article  CAS  Google Scholar 

  36. Richter M, Rossello-Mora R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106:19126–19131

    Article  CAS  Google Scholar 

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Acknowledgements

This work was supported by the Natural Science Foundation of Zhejiang Province (LY18D060003). We would like to thank Dr. Xu Youping and Dr. Ge Zhiwei (Analysis Center of Agrobiology and Environmental Sciences, Faculty of Agriculture, Life and Environment Sciences, Zhejiang University) for fatty acid and respiratory quinones analysis, respectively

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Correspondence to Pin-Mei Wang.

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Khan, I., Debnath, S.C., Yan, C. et al. Flavobacterium ajazii sp. nov., Isolated from Seaweed of Gouqi Island, China. Curr Microbiol 77, 2925–2932 (2020). https://doi.org/10.1007/s00284-020-02112-1

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  • DOI: https://doi.org/10.1007/s00284-020-02112-1

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