Reversible B/Z-DNA transition under the low salt condition and non-B-form polydApolydT selectivity by a cubane-like europium-L-aspartic acid complex

Biophys J. 2006 May 1;90(9):3203-7. doi: 10.1529/biophysj.105.078402. Epub 2006 Feb 10.

Abstract

We report here that a cubane-like europium-L-aspartic acid complex at physiological pH can discriminate between DNA structures as judged by the comparison of thermal denaturation, binding stoichiometry, temperature-dependent fluorescence enhancement, and circular dichroism and gel electrophoresis studies. This complex can selectively stabilize non-B-form DNA polydApolydT but destabilize polydGdCpolydGdC and polydAdTpolydAdT. Further studies show that this complex can convert B-form polydGdCpolydGdC to Z-form under the low salt condition at physiological temperature 37 degrees C, and the transition is reversible, similar to RNA polymerase, which turns unwound DNA into Z-DNA and converts it back to B-DNA after transcription. The potential uses of a left-handed helix-selective probe in biology are obvious. Z-DNA is a transient structure and does not exist as a stable feature of the double helix. Therefore, probing this transient structure with a metal-amino acid complex under the low salt condition at physiological temperature would provide insights into their transitions in vivo and are of great interest.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aspartic Acid / chemistry
  • Aspartic Acid / physiology*
  • Circular Dichroism
  • Crystallization
  • Crystallography, X-Ray
  • DNA, Z-Form / chemistry
  • DNA, Z-Form / metabolism*
  • Europium / chemistry
  • Europium / physiology*
  • Poly dA-dT / chemistry
  • Poly dA-dT / metabolism*
  • Salts
  • Spectrophotometry, Ultraviolet

Substances

  • DNA, Z-Form
  • Salts
  • Poly dA-dT
  • Aspartic Acid
  • Europium