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No entailing laws, but enablement in the evolution of the biosphere

Published:07 July 2012Publication History

ABSTRACT

Biological evolution is a complex blend of ever changing structural stability, variability and emergence of new phenotypes, niches, ecosystems. We wish to argue that the evolution of life marks the end of a physics world view of law entailed dynamics. Our considerations depend upon discussing the variability of the very "contexts of life": the interactions between organisms, biological niches and ecosystems. These are ever changing, intrinsically indeterminate and even unprestatable: we do not know ahead of time the "niches" which constitute the boundary conditions on selection. More generally, by the mathematical unprestatability of the "phase space" (space of possibilities), no laws of motion can be formulated for evolution. We call this radical emergence, from life to life. The purpose of this paper is the integration of variation and diversity in a sound conceptual frame and situate unpredictability at a novel theoretical level, that of the very phase space. Our argument will be carried on in close comparisons with physics and the mathematical constructions of phase spaces in that discipline. The role of (theoretical) symmetries as invariant preserving transformations will allow us to understand the nature of physical phase spaces and to stress the differences required for a sound biological theoretizing. In this frame, we discuss the novel notion of ''enablement". Life lives in a web of enablement and radical emergence. This will restrict causal analyses to differential cases (a difference that causes a difference). Mutations or other causal differences will allow us to stress that ''non conservation principles" are at the core of evolution, in contrast to physical dynamics, largely based on conservation principles as symmetries. Critical transitions, the main locus of symmetry changes in physics, will be discussed, and lead to ''extended criticality" as a conceptual frame for a better understanding of the living state of matter.

References

  1. M. Aon, S. Cortassa, and B. O'Rourke. Percolation and criticality in a mitochondrial network. PNAS, 101(13):4447, 2004.Google ScholarGoogle ScholarCross RefCross Ref
  2. F. Bailly. Niveaux d'organisation, changements de niveaux, finalité. Philosophica, 47:31--47, 1991.Google ScholarGoogle Scholar
  3. F. Bailly and G. Longo. Extended critical situations: the physical singularity of life phenomena. Journal of Biological Systems, 16(2):309, 2008.Google ScholarGoogle ScholarCross RefCross Ref
  4. F. Bailly and G. Longo. Mathematics and the natural sciences; The Physical Singularity of Life. Imperial College Press, 2011.Google ScholarGoogle Scholar
  5. J. Binney, N. Dowrick, A. Fisher, and M. Newman. The Theory of Critical Phenomena: An Introduction to the Renormalization Group. Oxford U. P., 1992.Google ScholarGoogle Scholar
  6. M. Buiatti and G. Longo. Randomness and multi-level interactions in biology. Arxiv:1104.1110, 2011.Google ScholarGoogle Scholar
  7. J. Ceron-Carrasco, A. Requena, E. Perpete, and D. Michaux, C.and Jacquemin. Double proton transfer mechanism in the adenine-uracil base pair and spontaneous mutation in rna duplex. Chemical Physics Letters, 484:64--68, 2009.Google ScholarGoogle ScholarCross RefCross Ref
  8. E. Collini, C. Wong, K. Wilk., P. Curmi, P. Brurner, and D. Scholes G. Coherently wired light harvesting in photosynthetic marine algae at ambient temperature. Nature, 463:644--648, 2010.Google ScholarGoogle ScholarCross RefCross Ref
  9. M. Dietrich. Richard goldschmidt: hopeful monsters and other heresies. Nature reviews. Genetics, 4:68--74, 2003/01/ 2003. Historical Article,Journal Article,Portraits,.Google ScholarGoogle Scholar
  10. G. Engel, T. Calhoun, E. Read, T. Ahn, T. Mançal, C. Yuan-Chung, R. Blankenship, and G. Fleming. Evidence for wavelike energy transfer through quantum coherence in protosynthetic systems. Nature, 447:782--786, 2007.Google ScholarGoogle ScholarCross RefCross Ref
  11. M. Fisher. Renormalization group theory: Its basis and formulation in statistical physics. Reviews of Modern Physics, 70(2):653--681, 1998.Google ScholarGoogle ScholarCross RefCross Ref
  12. S. Gould. The return of hopeful monsters. Natural History, 86:22--30, 1977.Google ScholarGoogle Scholar
  13. H. Gray and J. Winkler. Electron tunneling through proteins. Q. Rev. Biophys., 36:341--372, 2003.Google ScholarGoogle ScholarCross RefCross Ref
  14. H. J. Jensen and P. Sibani. Glassy dynamics. Scholarpedia, 2(6):2030, 2007.Google ScholarGoogle ScholarCross RefCross Ref
  15. S. Kauffman. Investigations. Oxford University Press, N.Y., 2000.Google ScholarGoogle Scholar
  16. S. Kauffman. Reinventing the Sacred. Basic Books, N.Y., 2008.Google ScholarGoogle Scholar
  17. K. Kiyono, Z. Struzik, N. Aoyagi, S. Sakata, J. Hayano, and Y. Yamamoto. Critical scale invariance in a healthy human heart rate. Physical Review Letters, 93(17):178103, 2004.Google ScholarGoogle ScholarCross RefCross Ref
  18. R. Liu and H. Ochman. Stepwise formation of the bacterial flagellar system. Proceedings of the National Academy of Sciences, 104(17):7116 -- 7121, 2007.Google ScholarGoogle ScholarCross RefCross Ref
  19. G. Longo and M. Montévil. From physics to biology by extending criticality and symmetry breakings. Progress in Biophysics and Molecular Biology, 106(2):340 -- 347, 2011. Systems Biology and Cancer.Google ScholarGoogle ScholarCross RefCross Ref
  20. B. B. Machta, S. Papanikolaou, J. P. Sethna, and S. L. Veatch. A minimal model of plasma membrane heterogeneity requires coupling cortical actin to criticality. Biophysical journal, 100(7):1668--1677, 2011.Google ScholarGoogle ScholarCross RefCross Ref
  21. T. Mora and W. Bialek. Are biological systems poised at criticality? Journal of Statistical Physics, 144:268--302, 2011. 10.1007/s10955-011-0229--4.Google ScholarGoogle ScholarCross RefCross Ref
  22. M. Mossio, G. Longo, and J. Stewart. A computable expression of closure to efficient causation. Journal of Theoretical Biology, 257(3):489 -- 498, 2009.Google ScholarGoogle ScholarCross RefCross Ref
  23. D. Noble. Could there be a synthesis between western and oriental medicine, and with sasang constitutional medicine in particular? Evidence-Based Complementary and Alternative Medicine, 6(S1):5--10, 2009.Google ScholarGoogle Scholar
  24. M. Nykter, N. Price, M. Aldana, S. Ramsey, S. Kauffman, L. Hood, O. Yli-Harja, and I. Shmulevich. Gene expression dynamics in the macrophage exhibit criticality. Proceedings of the National Academy of Sciences, 105(6):1897, 2008.Google ScholarGoogle ScholarCross RefCross Ref
  25. S. F. Perry, R. J. A. Wilson, C. Straus, M. B. Harris, and J. E. Remmers. Which came first, the lung or the breath? Comparative Biochemistry and Physiology - Part A, 129(1):37 -- 47, 2001.Google ScholarGoogle Scholar
  26. J. P. Sethna. Statistical mechanics: Entropy, order parameters, and complexity. Oxford University Press, USA, 2006.Google ScholarGoogle Scholar
  27. C. Sonnenschein and A. Soto. The society of cells: cancer and control of cell proliferation. Springer Verlag, 1999.Google ScholarGoogle Scholar
  28. F. Strocchi. Symmetry breaking, volume 732 of Lecture Notes in Physics. Springer Verlag, 2005.Google ScholarGoogle Scholar
  29. G. Werner. Metastability, criticality and phase transitions in brain and its models. Biosystems, 90(2):496--508, 2007.Google ScholarGoogle ScholarCross RefCross Ref
  30. H. Weyl. Symmetry. Princeton Univ Pr, 1983.Google ScholarGoogle Scholar
  31. J. R. Winkler, H. B. Gray, T. R. Prytkova, I. V. Kurnikov, and D. N. Beratan. Electron Transfer through Proteins, pages 15--33. Wiley-VCH Verlag GmbH and Co. KGaA, 2005.Google ScholarGoogle Scholar
  32. W. Zheng, Z. Wang, J. E. Collins, R. M. Andrews, D. Stemple, and Z. Gong. Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and mammalian lung. PLoS ONE, 6(8):e24019, 08 2011.Google ScholarGoogle ScholarCross RefCross Ref
  33. J. Zinn-Justin. Phase transitions and renormalization group. Oxford University Press, USA, 2007.Google ScholarGoogle Scholar

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          cover image ACM Conferences
          GECCO '12: Proceedings of the 14th annual conference companion on Genetic and evolutionary computation
          July 2012
          1586 pages
          ISBN:9781450311786
          DOI:10.1145/2330784

          Copyright © 2012 ACM

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          • Published: 7 July 2012

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