Skip to main content
Log in

Mitochondrial Control Region and Population Genetic Patterns of Nycticebus bengalensis and N. pygmaeus

  • Published:
International Journal of Primatology Aims and scope Submit manuscript

Abstract

Bengal slow lorises (Nycticebus bengalensis) and pygmy slow lorises (Nycticebus pygmaeus) are nocturnal which creates difficulties to study them in the field. There is a scarcity of data on them and their population genetics are poorly understood. We sequenced and analyzed a partial fragment in the first hypervariable region of the mitochondrial control region or D-loop HVRI of 21 Nycticebus bengalensis and 119 N. pygmaeus from the boundary between China and Vietnam where they are sympatric. Though the sample size for Nycticebus pygmaeus is much larger, the polymorphism level is much lower than that of N. bengalensis, possibly because of (1) external gene flow from other habitats of N. bengalensis, (2) gene ingression from Sunda slow lorises (N. coucang coucang) to N. bengalensis, (3) a skewed birth sex ratio in N. pygmaeus, and (4) a possible low survival rate of infant N. pygmaeus. Based on genetic comparisons to Nycticebus bengalensis, we propose that N. pygmaeus in southern China and northern Vietnam might have migrated from middle or southern Vietnam recently.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Avise, J. C. (1991). Ten unorthodox perspectives on evolution prompted by comparative population genetic findings on mitochondrial DNA. Annual Review of Genetics, 25, 45–69.

    PubMed  CAS  Google Scholar 

  • Bandelt, H. J., Forster, P., Sykes, B. C., and Richards, M. B. (1995). Mitochondrial portraits of human populations using median networks. Genetics, 141, 743–753.

    PubMed  CAS  Google Scholar 

  • Chen, J. H., Pan, D., Groves, C., Wang, Y. X., Narushima, E., Fitch-Snyder, H., et al. (2005). Molecular phylogeny of Nycticebus inferred from mitochondrial genes. International Journal of Primatolology, In press.

  • Easteal, S. (1991). The relative rate of DNA evolution in primates. Molecular Biology and Evolution, 8, 115–127.

    PubMed  CAS  Google Scholar 

  • Excoffier, L., and Yang, Z. (1999). Substitution rate variation among sites in mitochondrial hypervariable region of humans and chimpanzees. Molecular Biology and Evolution, 16, 1357–1368.

    PubMed  CAS  Google Scholar 

  • Fitch-Snyder, H. (2000). Reproductive patterns in a breeding colony of pygmy lorises (Nycticebus pygmaeus) Measured by behavioral and physiological correlates of gonadal activity. San Diego: San Diego State University.

    Google Scholar 

  • Griffiths, R. C., and Tavare, S. (1994). Sampling theory for neutral alleles in a varying environment. Philosophical Transactions of the Royal Society of London Series. B-Biological Science, 344, 403–410.

    Article  CAS  Google Scholar 

  • Groves, C. P. (2001). Primate taxonomy. Washington, D.C: Smithsonian Institution Press.

    Google Scholar 

  • Jazin, E., Soodyall, H., Jalonen, P., Lindholm, E., Stoneking, M., and Gyllenstein, U. (1998). Mitochondrial mutation rate revisited: Hot spots and polymorphism. Nature Genetics, 18, 109–110.

    Article  PubMed  CAS  Google Scholar 

  • Kumar, S., Tamura, K., Jakobsen, I. B., and Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics, 17, 1244–1245.

    Article  PubMed  CAS  Google Scholar 

  • Li, W. H., and Graur, D. (1991). Fundamentals of molecular evolution. Sunderland, MA: Sinauer Associates.

    Google Scholar 

  • Lu, X. M., Fu, Y. X., and Zhang, Y. P. (2002). Evolution of mitochondrial cytochrome b pseudogene in genus Nycticebus. Molecular Biology and Evolution, 19, 2337–2341.

    PubMed  CAS  Google Scholar 

  • Lu, X. M., Wang, Y. X., and Zhang, Y. P. (2001). Divergence and phylogeny of mitochondrial cytochrome b gene from species in genus Nycticebus. Zoology Research, 22, 93–98.

    CAS  Google Scholar 

  • Nei, M. (1987). Molecular evolutionary genetics. New York: Columbia University Press.

    Google Scholar 

  • Oxnard, C. E., Crompton, R. H., and Lieberman, S. S. (1990). The case of the prosimian primates. Seattle: University of Washington Press.

    Google Scholar 

  • Parsons, T. J., and Holland, M. M. (1998). Reply to Jazin et al. Nature Genetics, 18, 110.

    CAS  Google Scholar 

  • Parsons, T. J., Muniec, D. S., Sullivan, K., Woodyatt, N., Alliston-Greiner, R., Wilson, M. R., et al. (1997). A high observed substitution rate in the human mitochondrial DNA control region. Nature Genetics, 15, 363–368.

    Article  PubMed  CAS  Google Scholar 

  • Raaum, R. L., Sterner, K. N., Noviello, C. M., Stewart, C. B., and Disotell, T. R. (2005). Catarrhine primate divergence dates estimated from complete mitochondrial genomes: Concordance with fossil and nuclear DNA evidence. Journal of Human Evolution, 48, 237–257.

    Article  PubMed  Google Scholar 

  • Rozas, J., Sanchez-Delbarrio, X. M., and Rozas, R. (2003). DNASP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496–2497.

    Article  PubMed  CAS  Google Scholar 

  • Tajima, F. (1983). Evolutionary relationship of DNA sequences in finite populations. Genetics, 105, 437–460.

    PubMed  CAS  Google Scholar 

  • Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585–595.

    PubMed  CAS  Google Scholar 

  • Tan, C. L., and Drake, J. H. (2001). Evidence of tree gouging and exudate eating in pygmy slow lorises (Nycticebus pygmaeus). Folia Primatologica, 72, 37–39.

    Article  CAS  Google Scholar 

  • Wang, S. (1998). China red data book of endangered animals. Beijing, Hong Kong, New York: Science Press.

    Google Scholar 

  • Watterson, G. A. (1975). On the number of segregating sites in genetical models without recombination. Theoretical Population Biology, 7, 256–276.

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgment

The Bureau of Science and Technology of Yunnan Province, and National Natural Science Foundation of China (grants 30460026, 30621092) provided funding for this work.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ya-Ping Zhang.

Additional information

Deng Pan and Jing-Hua Chen made equal contributions to the work.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Pan, D., Chen, JH., Groves, C. et al. Mitochondrial Control Region and Population Genetic Patterns of Nycticebus bengalensis and N. pygmaeus . Int J Primatol 28, 791–799 (2007). https://doi.org/10.1007/s10764-007-9157-1

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10764-007-9157-1

Keywords

Navigation