DNA sequences from the str operon of Escherichia coli

J Biol Chem. 1980 May 25;255(10):4660-6.

Abstract

The str operon at 72 min on the Escherichia coli chromosome contains genes for ribosomal proteins (r-proteins) S12 (str or rpsL) and S7 (rpsG) and elongation factors G (fus) and Tu (tufA). The sequence of the entire S12 gene, the S12-S7 intercistronic region, and the beginning of the S7 gene is reported. Also, the sequence of the end of the S7 gene, the S7-G intercistronic region, and the beginning of the elongation fractor G gene is reported. The S12-S7 intercistronic region is 96 base pairs long, in contrast to other intercistronic regions in r-protein operons which have been found to vary from 3 to 66 base pairs. The S7-G intercistronic region is only 27 bases long, supporting the previous conclusion that r-protein and elongation factor genes are co-transcribed. A comparison of translation initiation sites of the S12 and S7 genes, and other examples of co-transcribed r-protein genes, reveals no obvious features that could account for equimolar synthesis of all r-proteins. The codon usage in the S12 and S7 genes follows the pattern observed in other r-protein genes; that is, there is a highly preferential usage of codons recognized by the most abundant of isoaccepting tRNA species. This pattern could reflect the cell's need for efficient translation or minimal errors, or both, in r-protein synthesis.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • DNA, Bacterial* / metabolism
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins
  • Genes
  • Genetic Code
  • Operon*
  • Peptide Elongation Factors / biosynthesis
  • Protein Biosynthesis
  • Ribosomal Protein S9
  • Ribosomal Proteins / biosynthesis
  • Transcription, Genetic

Substances

  • DNA, Bacterial
  • Escherichia coli Proteins
  • Peptide Elongation Factors
  • Ribosomal Protein S9
  • Ribosomal Proteins
  • RpsI protein, E coli

Associated data

  • GENBANK/J01688
  • GENBANK/J01689