How ribosomes make peptide bonds

Trends Biochem Sci. 2007 Jan;32(1):20-6. doi: 10.1016/j.tibs.2006.11.007. Epub 2006 Dec 8.

Abstract

Ribosomes are molecular machines that synthesize proteins in the cell. Recent biochemical analyses and high-resolution crystal structures of the bacterial ribosome have shown that the active site for the formation of peptide bonds--the peptidyl-transferase center--is composed solely of rRNA. Thus, the ribosome is the largest known RNA catalyst and the only natural ribozyme that has a synthetic activity. The ribosome employs entropic catalysis to accelerate peptide-bond formation by positioning substrates, reorganizing water in the active site and providing an electrostatic network that stabilizes reaction intermediates. Proton transfer during the reaction seems to be promoted by a concerted shuttle mechanism that involves ribose hydroxyl groups on the tRNA substrate.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Binding Sites
  • Models, Molecular
  • Peptide Biosynthesis*
  • Peptidyl Transferases / metabolism
  • RNA, Catalytic / metabolism
  • RNA, Ribosomal / metabolism*
  • RNA, Ribosomal, 23S / metabolism
  • Ribosomes / physiology*
  • Thermodynamics

Substances

  • RNA, Catalytic
  • RNA, Ribosomal
  • RNA, Ribosomal, 23S
  • Peptidyl Transferases